Analyzing protein-nanocluster interactions with graph-based machine learning for molecular dynamics

In this work a custom graph convolutional network was succesfully constructed and trained to predict interaction energies in molecular dynamics simulations between Au25(SR)18 nanoclusters and BSA proteins based on their physical and chemical features. Data from molecular dynamics simulations was use...

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Bibliographic Details
Main Author: Sikoniemi, Anssi
Other Authors: Faculty of Sciences, Matemaattis-luonnontieteellinen tiedekunta, Department of Physics, Fysiikan laitos, University of Jyväskylä, Jyväskylän yliopisto
Format: Master's thesis
Language:eng
Published: 2024
Subjects:
Online Access: https://jyx.jyu.fi/handle/123456789/95736