The effects of urban indoor farming for intestinal microbiota richness and diversity

Allergiat ja immuunivälitteiset sairaudet ovat nopeasti kasvava ongelma teollistuneissa maissa. Viime vuosikymmenten aikana on käynyt selväksi, että ihmisten etääntyminen luonnosta on yhteydessä immuunivälitteisten sairauksien yleistymiseen. Tämä ImmunoGarden -tutkimus tähtää immuunivälitteisten sai...

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Main Author: Jämsen, Ronja
Other Authors: Matemaattis-luonnontieteellinen tiedekunta, Faculty of Sciences, Bio- ja ympäristötieteiden laitos, Department of Biological and Environmental Science, Jyväskylän yliopisto, University of Jyväskylä
Format: Master's thesis
Language:eng
Published: 2022
Subjects:
Online Access: https://jyx.jyu.fi/handle/123456789/84576
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author Jämsen, Ronja
author2 Matemaattis-luonnontieteellinen tiedekunta Faculty of Sciences Bio- ja ympäristötieteiden laitos Department of Biological and Environmental Science Jyväskylän yliopisto University of Jyväskylä
author_facet Jämsen, Ronja Matemaattis-luonnontieteellinen tiedekunta Faculty of Sciences Bio- ja ympäristötieteiden laitos Department of Biological and Environmental Science Jyväskylän yliopisto University of Jyväskylä Jämsen, Ronja Matemaattis-luonnontieteellinen tiedekunta Faculty of Sciences Bio- ja ympäristötieteiden laitos Department of Biological and Environmental Science Jyväskylän yliopisto University of Jyväskylä
author_sort Jämsen, Ronja
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description Allergiat ja immuunivälitteiset sairaudet ovat nopeasti kasvava ongelma teollistuneissa maissa. Viime vuosikymmenten aikana on käynyt selväksi, että ihmisten etääntyminen luonnosta on yhteydessä immuunivälitteisten sairauksien yleistymiseen. Tämä ImmunoGarden -tutkimus tähtää immuunivälitteisten sairauksien luonnonmukaisten ennaltaehkäisykeinojen ja hoitomuotojen kehittämiseen, ja tämän pro gradu -tutkimuksen tarkoituksena on selvittää, muuttuvatko ihmisen suolistomikrobiston lajirunsaus ja monimuotoisuus kaupunkiympäristössä tapahtuvan sisäviljelyn seurauksena, ja ovatko suolistomikrobiston lajirunsaus ja monimuotoisuus erilaiset eri kasvualustoja käyttäneiden ryhmien välillä. Yksi kasvualustoista on varta vasten tätä koetta varten suunniteltu, ja siihen on lisätty monimuotoista metsä- ja kasvimikrobistoa. Vapaaehtoiset koehenkilöt harjoittivat kaupunkiviljelyä kolmen kuukauden ajan istuttamalla erilaisia viljelykasveja joko kompostimultaan tai mikrobirikastettuun kasvualustaan, ja heiltä kerättiin ulostenäytteet. Ulostenäytteistä eristettiin 16S rRNA-geenit, jotka monistettiin PCR:lla, ja niille tehtiin Illumina-sekvensointi. Tässä kokeessa kaupunkiympäristössä tapahtunut sisäviljely ei merkittävästi muuttanut ihmisen suolistomikrobiston lajirikkautta tai monimuotoisuutta, mutta ajan kuluessa suolistomikrobistot muuttuivat molemmilla tutkimusryhmillä COVID19-pandemiasta johtuvan hygieniatason nousun seurauksena. Allergies and immune-mediated diseases are a rapidly growing threat in industrialized countries. During the last few decades, it has become clearer that people distancing from nature might have something to do with this increase. This ImmunoGarden study aims for finding natural solutions for preventing and possibly curing immune-mediated diseases, and the goal for this pro gradu study is to answer the question whether the human intestinal microbiota richness and diversity change due to urban indoor farming or not and do the changes in intestinal microbiota vary in between different research groups using different seedbeds. One of the used seedbeds is designed especially for this experiment, and it has safe and diverse forest- and plant microbiota added in it. The stool samples were collected from volunteers who had done urban indoor farming for three months using either compost soil or microbe-enriched seedbed, and different plants for farming. The 16S rRNA gene was isolated from the stool samples, multiplied in PCR, and analyzed further with Illumina sequencing. With this experiment the urban indoor farming did not significantly change the human intestinal microbiota richness or diversity, but the intestinal microbiotas of the research subjects in both research groups changed through time due to the increased hygiene levels in the beginning of COVID19-pandemic.
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spellingShingle Jämsen, Ronja The effects of urban indoor farming for intestinal microbiota richness and diversity immune mediated diseases Solu- ja molekyylibiologia Cell and molecular biology 4013 suolisto bakteerit mikrobit mikrobisto suolistomikrobisto biodiversiteetti luonnon monimuotoisuus immuunijärjestelmä intestines bacteria microbes microbiome gastrointestinal microbiota biodiversity natural diversity immune system
title The effects of urban indoor farming for intestinal microbiota richness and diversity
title_full The effects of urban indoor farming for intestinal microbiota richness and diversity
title_fullStr The effects of urban indoor farming for intestinal microbiota richness and diversity The effects of urban indoor farming for intestinal microbiota richness and diversity
title_full_unstemmed The effects of urban indoor farming for intestinal microbiota richness and diversity The effects of urban indoor farming for intestinal microbiota richness and diversity
title_short The effects of urban indoor farming for intestinal microbiota richness and diversity
title_sort effects of urban indoor farming for intestinal microbiota richness and diversity
title_txtP The effects of urban indoor farming for intestinal microbiota richness and diversity
topic immune mediated diseases Solu- ja molekyylibiologia Cell and molecular biology 4013 suolisto bakteerit mikrobit mikrobisto suolistomikrobisto biodiversiteetti luonnon monimuotoisuus immuunijärjestelmä intestines bacteria microbes microbiome gastrointestinal microbiota biodiversity natural diversity immune system
topic_facet 4013 Cell and molecular biology Solu- ja molekyylibiologia bacteria bakteerit biodiversiteetti biodiversity gastrointestinal microbiota immune mediated diseases immune system immuunijärjestelmä intestines luonnon monimuotoisuus microbes microbiome mikrobisto mikrobit natural diversity suolisto suolistomikrobisto
url https://jyx.jyu.fi/handle/123456789/84576 http://www.urn.fi/URN:NBN:fi:jyu-202212235816
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