Fabrication of DNA origami lattice on silicon surface for DNA-assisted lithography

Metamaterials obtain new properties from having metallized nanoscale features that are often arranged in repeating patterns. In particular, there is a need to create metasurfaces with a negative refractive index. As nanoscale fabrication using conventional top-down methods can be both difficult and...

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Main Author: Järvinen, Heini
Other Authors: Matemaattis-luonnontieteellinen tiedekunta, Faculty of Sciences, Fysiikan laitos, Department of Physics, Jyväskylän yliopisto, University of Jyväskylä
Format: Master's thesis
Language:eng
Published: 2022
Subjects:
Online Access: https://jyx.jyu.fi/handle/123456789/82454
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author Järvinen, Heini
author2 Matemaattis-luonnontieteellinen tiedekunta Faculty of Sciences Fysiikan laitos Department of Physics Jyväskylän yliopisto University of Jyväskylä
author_facet Järvinen, Heini Matemaattis-luonnontieteellinen tiedekunta Faculty of Sciences Fysiikan laitos Department of Physics Jyväskylän yliopisto University of Jyväskylä Järvinen, Heini Matemaattis-luonnontieteellinen tiedekunta Faculty of Sciences Fysiikan laitos Department of Physics Jyväskylän yliopisto University of Jyväskylä
author_sort Järvinen, Heini
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description Metamaterials obtain new properties from having metallized nanoscale features that are often arranged in repeating patterns. In particular, there is a need to create metasurfaces with a negative refractive index. As nanoscale fabrication using conventional top-down methods can be both difficult and time-consuming, bottom-up techniques have gained growing interest. Especially, the DNA origami method can be utilized to assemble lattices with nanoscale features on 2D surfaces, which can then be metallized using DNA-assisted lithography (DALI). This thesis provides a full study of the DNA origami fishnet lattice assembly kinetics and optimization of lattice order on a silicon surface using liquid and air AFM imaging. Similar studies have only been performed on mica, which is unsuitable for the lithographic processes used in DALI. A fishnet lattice with nanoscale features was assembled on silicon utilizing the blunt-ended, twist-corrected Seeman tile (TC-ST) origami and ionic interactions on a solid-liquid interface. In total, the effect of six different cations (Mg2+, Ni2+, Ca2+, Na+, K+, Li+) on DNA origami attachment and lattice quality were studied, out of which magnesium (Mg2+) and sodium (Na+) produced the best quality monolayer. Additionally, for dried samples nickel (Ni2+) was found to be essential for fixing the formed structures on silicon to avoid the detachment of DNA origami during washing. Also, the effect of temperature was found to be crucial for utilizing lower ionic concentrations like the ones employed on mica. Alternatively, the amount of blunt-end interactions between origami can be decreased to work in lower temperatures. In conclusion, similar fishnets with polycrystal-like lattice domains can be produced on silicon as what can be created on mica.
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spellingShingle Järvinen, Heini Fabrication of DNA origami lattice on silicon surface for DNA-assisted lithography DNA origami DNA nanotechnology solid-liquid interface metasurface negative refractive index Fysiikka Physics 4021 DNA hilateoria metamateriaalit pii atomivoimamikroskopia lattice theory metamaterials silicon atomic force microscopy
title Fabrication of DNA origami lattice on silicon surface for DNA-assisted lithography
title_full Fabrication of DNA origami lattice on silicon surface for DNA-assisted lithography
title_fullStr Fabrication of DNA origami lattice on silicon surface for DNA-assisted lithography Fabrication of DNA origami lattice on silicon surface for DNA-assisted lithography
title_full_unstemmed Fabrication of DNA origami lattice on silicon surface for DNA-assisted lithography Fabrication of DNA origami lattice on silicon surface for DNA-assisted lithography
title_short Fabrication of DNA origami lattice on silicon surface for DNA-assisted lithography
title_sort fabrication of dna origami lattice on silicon surface for dna assisted lithography
title_txtP Fabrication of DNA origami lattice on silicon surface for DNA-assisted lithography
topic DNA origami DNA nanotechnology solid-liquid interface metasurface negative refractive index Fysiikka Physics 4021 DNA hilateoria metamateriaalit pii atomivoimamikroskopia lattice theory metamaterials silicon atomic force microscopy
topic_facet 4021 DNA DNA nanotechnology DNA origami Fysiikka Physics atomic force microscopy atomivoimamikroskopia hilateoria lattice theory metamateriaalit metamaterials metasurface negative refractive index pii silicon solid-liquid interface
url https://jyx.jyu.fi/handle/123456789/82454 http://www.urn.fi/URN:NBN:fi:jyu-202208104003
work_keys_str_mv AT järvinenheini fabricationofdnaorigamilatticeonsiliconsurfacefordnaassistedlithography