Characterization of Acinetobacter baumannii bacteriophages and determination of phage resistance costs in bacterial hosts

Antibioottien teho on heikennyt maailmanlaajuisesti ja resistenssisyys monia eri antibiootteja vastaan on yleistynyt lähes kaikissa eri bakteerilajeissa. Acinetobacter baumannii on noussut esiin merkittävimpänä monen antibioottiresistanssin omaavana patogeenina, varsinkin sairaalaympäristöissä. T...

Full description

Bibliographic Details
Main Author: Ylänne, Matti
Other Authors: Matemaattis-luonnontieteellinen tiedekunta, Faculty of Sciences, Bio- ja ympäristötieteiden laitos, Department of Biological and Environmental Science, Jyväskylän yliopisto, University of Jyväskylä
Format: Master's thesis
Language:eng
Published: 2021
Subjects:
Online Access: https://jyx.jyu.fi/handle/123456789/76895
_version_ 1828193064602042368
author Ylänne, Matti
author2 Matemaattis-luonnontieteellinen tiedekunta Faculty of Sciences Bio- ja ympäristötieteiden laitos Department of Biological and Environmental Science Jyväskylän yliopisto University of Jyväskylä
author_facet Ylänne, Matti Matemaattis-luonnontieteellinen tiedekunta Faculty of Sciences Bio- ja ympäristötieteiden laitos Department of Biological and Environmental Science Jyväskylän yliopisto University of Jyväskylä Ylänne, Matti Matemaattis-luonnontieteellinen tiedekunta Faculty of Sciences Bio- ja ympäristötieteiden laitos Department of Biological and Environmental Science Jyväskylän yliopisto University of Jyväskylä
author_sort Ylänne, Matti
datasource_str_mv jyx
description Antibioottien teho on heikennyt maailmanlaajuisesti ja resistenssisyys monia eri antibiootteja vastaan on yleistynyt lähes kaikissa eri bakteerilajeissa. Acinetobacter baumannii on noussut esiin merkittävimpänä monen antibioottiresistanssin omaavana patogeenina, varsinkin sairaalaympäristöissä. Tämä johtuu pääosin A. baumanniin tehokkaista geneettisistä ominaisuuksista, kuten sisäisen puolustuksen uudelleenjärjestelystä, jonka avulla bakteeri on kyennyt muun muassa keräämään resistenssisyyksiä monia antibiootteja vastaan. Se myös kykenee selviämään erilaisissa olosuhteissa, täten lisäten sen leviäväisyyttä. A. baumanniista on jo löytynyt kantoja, jotka ovat resistenttejä kaikille tunnetuille antibiooteille. Antibioottiresistenttien A. baumannii -kantojen infektiomäärien kasvaessa, uudet hoitokeinot ovat tarpeen. Faagiterapia eli bakteerispesifisten virusten (bakteriofaagien) käyttö on mahdollinen vaihtoehto antibioottiresistenttien bakteeri-infektioiden hoitoon. Tutkimuksen tavoitteena oli eristää faageja jätevedestä neljää eri antibioottiresistenttiä A. baumannii kantaa vastaan, tutkia faagiresistenssin kehitystä ja määrittää resistenssiyden vaikutukset bakteerin kasvuominaisuuksiin. Faagieristys jätevedestä ei onnistunut useista yrityksistä huolimatta. Täten, seitsemän aikaisemmin eristettyä faagia karakterisoitiin tutkimuksessa plakkianalyyseillä, kasvukokeilla, DNA sekvensoinnilla ja elektronimikroskopoinnilla. Kaikki faagit olivat aikaisemmin tuntemattomia ja ovat mahdollisesti potentiaalisia faagiterapiaa varten. There has been a worldwide recession on effective antibiotics against increasing number of multi-antibiotic resistant bacteria across multiple species. Acinetobacter baumannii has arisen as most notable multi-drug resistant species in clinical care associated infections. This is due to A. baumannii’s efficient genetic machinery and upregulation of innate resistance mechanisms, which has allowed the accumulated resistance towards multiple classes of antibiotics. Furthermore, it has remarkable capability to survive harsh environments, which makes it possible for the bacteria to endure a long time and transmit to a possible host. New strains of A. baumannii have emerged, which have acquired resistance towards almost all known classes of antibiotics. With increasing number of reports about multi-drug resistant A. baumannii infections and outbreaks, new therapeutic approaches are needed to be pursued. Using viruses that target bacteria (phages) to combat against bacterial drug resistance is a potential therapy option. The aims of the study were to isolate phages from sewage water against 4 different antibiotic resistant A. baumannii strains, assess the phage resistance mechanisms of development and determine their viability of phage therapy. Phage isolations were attempted from wastewater without success. Thus, 7 previously isolated phages from the same wastewater source, were characterized via plaque assays, growth tests, genome sequencing and electron microscopy. All phages seem to be novel and have potential for usage in phage therapy, but more information is still needed for proper therapy assessment.
first_indexed 2024-09-11T08:50:26Z
format Pro gradu
free_online_boolean 1
fullrecord [{"key": "dc.contributor.advisor", "value": "Koskinen, Katariina", "language": "", "element": "contributor", "qualifier": "advisor", "schema": "dc"}, {"key": "dc.contributor.advisor", "value": "Jalasvuori, Matti", "language": "", "element": "contributor", "qualifier": "advisor", "schema": "dc"}, {"key": "dc.contributor.author", "value": "Yl\u00e4nne, Matti", "language": "", "element": "contributor", "qualifier": "author", "schema": "dc"}, {"key": "dc.date.accessioned", "value": "2021-06-29T07:22:39Z", "language": null, "element": "date", "qualifier": "accessioned", "schema": "dc"}, {"key": "dc.date.available", "value": "2021-06-29T07:22:39Z", "language": null, "element": "date", "qualifier": "available", "schema": "dc"}, {"key": "dc.date.issued", "value": "2021", "language": "", "element": "date", "qualifier": "issued", "schema": "dc"}, {"key": "dc.identifier.uri", "value": "https://jyx.jyu.fi/handle/123456789/76895", "language": null, "element": "identifier", "qualifier": "uri", "schema": "dc"}, {"key": "dc.description.abstract", "value": "Antibioottien teho on heikennyt maailmanlaajuisesti ja resistenssisyys monia eri \nantibiootteja vastaan on yleistynyt l\u00e4hes kaikissa eri bakteerilajeissa. Acinetobacter \nbaumannii on noussut esiin merkitt\u00e4vimp\u00e4n\u00e4 monen antibioottiresistanssin \nomaavana patogeenina, varsinkin sairaalaymp\u00e4rist\u00f6iss\u00e4. T\u00e4m\u00e4 johtuu p\u00e4\u00e4osin A. \nbaumanniin tehokkaista geneettisist\u00e4 ominaisuuksista, kuten sis\u00e4isen puolustuksen \nuudelleenj\u00e4rjestelyst\u00e4, jonka avulla bakteeri on kyennyt muun muassa ker\u00e4\u00e4m\u00e4\u00e4n \nresistenssisyyksi\u00e4 monia antibiootteja vastaan. Se my\u00f6s kykenee selvi\u00e4m\u00e4\u00e4n \nerilaisissa olosuhteissa, t\u00e4ten lis\u00e4ten sen levi\u00e4v\u00e4isyytt\u00e4. A. baumanniista on jo \nl\u00f6ytynyt kantoja, jotka ovat resistenttej\u00e4 kaikille tunnetuille antibiooteille. \nAntibioottiresistenttien A. baumannii -kantojen infektiom\u00e4\u00e4rien kasvaessa, uudet \nhoitokeinot ovat tarpeen. Faagiterapia eli bakteerispesifisten virusten \n(bakteriofaagien) k\u00e4ytt\u00f6 on mahdollinen vaihtoehto antibioottiresistenttien\nbakteeri-infektioiden hoitoon. Tutkimuksen tavoitteena oli erist\u00e4\u00e4 faageja \nj\u00e4tevedest\u00e4 nelj\u00e4\u00e4 eri antibioottiresistentti\u00e4 A. baumannii kantaa vastaan, tutkia \nfaagiresistenssin kehityst\u00e4 ja m\u00e4\u00e4ritt\u00e4\u00e4 resistenssiyden vaikutukset bakteerin \nkasvuominaisuuksiin. Faagieristys j\u00e4tevedest\u00e4 ei onnistunut useista yrityksist\u00e4 \nhuolimatta. T\u00e4ten, seitsem\u00e4n aikaisemmin eristetty\u00e4 faagia karakterisoitiin \ntutkimuksessa plakkianalyyseill\u00e4, kasvukokeilla, DNA sekvensoinnilla ja elektronimikroskopoinnilla. Kaikki faagit olivat \naikaisemmin tuntemattomia ja ovat \nmahdollisesti potentiaalisia faagiterapiaa varten.", "language": "fi", "element": "description", "qualifier": "abstract", "schema": "dc"}, {"key": "dc.description.abstract", "value": "There has been a worldwide recession on effective antibiotics against increasing \nnumber of multi-antibiotic resistant bacteria across multiple species. Acinetobacter \nbaumannii has arisen as most notable multi-drug resistant species in clinical care \nassociated infections. This is due to A. baumannii\u2019s efficient genetic machinery and \nupregulation of innate resistance mechanisms, which has allowed the accumulated \nresistance towards multiple classes of antibiotics. Furthermore, it has remarkable\ncapability to survive harsh environments, which makes it possible for the bacteria \nto endure a long time and transmit to a possible host. New strains of A. baumannii\nhave emerged, which have acquired resistance towards almost all known classes of \nantibiotics. With increasing number of reports about multi-drug resistant A. \nbaumannii infections and outbreaks, new therapeutic approaches are needed to be \npursued. Using viruses that target bacteria (phages) to combat against bacterial \ndrug resistance is a potential therapy option. The aims of the study were to isolate \nphages from sewage water against 4 different antibiotic resistant A. baumannii\nstrains, assess the phage resistance mechanisms of development and determine \ntheir viability of phage therapy. Phage isolations were attempted from wastewater \nwithout success. Thus, 7 previously isolated phages from the same wastewater \nsource, were characterized via plaque assays, growth tests, genome sequencing and \nelectron microscopy. All phages seem to be novel and have potential for usage in \nphage therapy, but more information is still needed for proper therapy assessment.", "language": "en", "element": "description", "qualifier": "abstract", "schema": "dc"}, {"key": "dc.description.provenance", "value": "Submitted by Miia Hakanen (mihakane@jyu.fi) on 2021-06-29T07:22:39Z\nNo. of bitstreams: 0", "language": "en", "element": "description", "qualifier": "provenance", "schema": "dc"}, {"key": "dc.description.provenance", "value": "Made available in DSpace on 2021-06-29T07:22:39Z (GMT). No. of bitstreams: 0\n Previous issue date: 2021", "language": "en", "element": "description", "qualifier": "provenance", "schema": "dc"}, {"key": "dc.format.extent", "value": "64", "language": "", "element": "format", "qualifier": "extent", "schema": "dc"}, {"key": "dc.format.mimetype", "value": "application/pdf", "language": null, "element": "format", "qualifier": "mimetype", "schema": "dc"}, {"key": "dc.language.iso", "value": "eng", "language": null, "element": "language", "qualifier": "iso", "schema": "dc"}, {"key": "dc.rights", "value": "In Copyright", "language": "en", "element": "rights", "qualifier": null, "schema": "dc"}, {"key": "dc.title", "value": "Characterization of Acinetobacter baumannii bacteriophages and determination of phage resistance costs in bacterial hosts", "language": "", "element": "title", "qualifier": null, "schema": "dc"}, {"key": "dc.type", "value": "master thesis", "language": null, "element": "type", "qualifier": null, "schema": "dc"}, {"key": "dc.identifier.urn", "value": "URN:NBN:fi:jyu-202106294085", "language": "", "element": "identifier", "qualifier": "urn", "schema": "dc"}, {"key": "dc.type.ontasot", "value": "Pro gradu -tutkielma", "language": "fi", "element": "type", "qualifier": "ontasot", "schema": "dc"}, {"key": "dc.type.ontasot", "value": "Master\u2019s thesis", "language": "en", "element": "type", "qualifier": "ontasot", "schema": "dc"}, {"key": "dc.contributor.faculty", "value": "Matemaattis-luonnontieteellinen tiedekunta", "language": "fi", "element": "contributor", "qualifier": "faculty", "schema": "dc"}, {"key": "dc.contributor.faculty", "value": "Faculty of Sciences", "language": "en", "element": "contributor", "qualifier": "faculty", "schema": "dc"}, {"key": "dc.contributor.department", "value": "Bio- ja ymp\u00e4rist\u00f6tieteiden laitos", "language": "fi", "element": "contributor", "qualifier": "department", "schema": "dc"}, {"key": "dc.contributor.department", "value": "Department of Biological and Environmental Science", "language": "en", "element": "contributor", "qualifier": "department", "schema": "dc"}, {"key": "dc.contributor.organization", "value": "Jyv\u00e4skyl\u00e4n yliopisto", "language": "fi", "element": "contributor", "qualifier": "organization", "schema": "dc"}, {"key": "dc.contributor.organization", "value": "University of Jyv\u00e4skyl\u00e4", "language": "en", "element": "contributor", "qualifier": "organization", "schema": "dc"}, {"key": "dc.subject.discipline", "value": "Solu- ja molekyylibiologia", "language": "fi", "element": "subject", "qualifier": "discipline", "schema": "dc"}, {"key": "dc.subject.discipline", "value": "Cell and molecular biology", "language": "en", "element": "subject", "qualifier": "discipline", "schema": "dc"}, {"key": "yvv.contractresearch.funding", "value": "0", "language": "", "element": "contractresearch", "qualifier": "funding", "schema": "yvv"}, {"key": "dc.type.coar", "value": "http://purl.org/coar/resource_type/c_bdcc", "language": null, "element": "type", "qualifier": "coar", "schema": "dc"}, {"key": "dc.rights.accesslevel", "value": "openAccess", "language": null, "element": "rights", "qualifier": "accesslevel", "schema": "dc"}, {"key": "dc.type.publication", "value": "masterThesis", "language": null, "element": "type", "qualifier": "publication", "schema": "dc"}, {"key": "dc.subject.oppiainekoodi", "value": "4013", "language": "", "element": "subject", "qualifier": "oppiainekoodi", "schema": "dc"}, {"key": "dc.subject.yso", "value": "bakteriofagit", "language": null, "element": "subject", "qualifier": "yso", "schema": "dc"}, {"key": "dc.subject.yso", "value": "antibiootit", "language": null, "element": "subject", "qualifier": "yso", "schema": "dc"}, {"key": "dc.subject.yso", "value": "bakteerit", "language": null, "element": "subject", "qualifier": "yso", "schema": "dc"}, {"key": "dc.subject.yso", "value": "fagiterapia", "language": null, "element": "subject", "qualifier": "yso", "schema": "dc"}, {"key": "dc.subject.yso", "value": "Acinetobacter baumannii", "language": null, "element": "subject", "qualifier": "yso", "schema": "dc"}, {"key": "dc.subject.yso", "value": "antibioottiresistenssi", "language": null, "element": "subject", "qualifier": "yso", "schema": "dc"}, {"key": "dc.subject.yso", "value": "virukset", "language": null, "element": "subject", "qualifier": "yso", "schema": "dc"}, {"key": "dc.subject.yso", "value": "mikrobiologia", "language": null, "element": "subject", "qualifier": "yso", "schema": "dc"}, {"key": "dc.subject.yso", "value": "bacteriophages", "language": null, "element": "subject", "qualifier": "yso", "schema": "dc"}, {"key": "dc.subject.yso", "value": "antibiotics", "language": null, "element": "subject", "qualifier": "yso", "schema": "dc"}, {"key": "dc.subject.yso", "value": "bacteria", "language": null, "element": "subject", "qualifier": "yso", "schema": "dc"}, {"key": "dc.subject.yso", "value": "phage therapy", "language": null, "element": "subject", "qualifier": "yso", "schema": "dc"}, {"key": "dc.subject.yso", "value": "Acinetobacter baumannii", "language": null, "element": "subject", "qualifier": "yso", "schema": "dc"}, {"key": "dc.subject.yso", "value": "antibiotic resistance", "language": null, "element": "subject", "qualifier": "yso", "schema": "dc"}, {"key": "dc.subject.yso", "value": "viruses", "language": null, "element": "subject", "qualifier": "yso", "schema": "dc"}, {"key": "dc.subject.yso", "value": "microbiology", "language": null, "element": "subject", "qualifier": "yso", "schema": "dc"}, {"key": "dc.format.content", "value": "fulltext", "language": null, "element": "format", "qualifier": "content", "schema": "dc"}, {"key": "dc.rights.url", "value": "https://rightsstatements.org/page/InC/1.0/", "language": null, "element": "rights", "qualifier": "url", "schema": "dc"}, {"key": "dc.type.okm", "value": "G2", "language": null, "element": "type", "qualifier": "okm", "schema": "dc"}]
id jyx.123456789_76895
language eng
last_indexed 2025-03-31T20:03:06Z
main_date 2021-01-01T00:00:00Z
main_date_str 2021
online_boolean 1
online_urls_str_mv {"url":"https:\/\/jyx.jyu.fi\/bitstreams\/084cf3eb-1d20-4144-ae56-a257a10318ad\/download","text":"URN:NBN:fi:jyu-202106294085.pdf","source":"jyx","mediaType":"application\/pdf"}
publishDate 2021
record_format qdc
source_str_mv jyx
spellingShingle Ylänne, Matti Characterization of Acinetobacter baumannii bacteriophages and determination of phage resistance costs in bacterial hosts Solu- ja molekyylibiologia Cell and molecular biology 4013 bakteriofagit antibiootit bakteerit fagiterapia Acinetobacter baumannii antibioottiresistenssi virukset mikrobiologia bacteriophages antibiotics bacteria phage therapy antibiotic resistance viruses microbiology
title Characterization of Acinetobacter baumannii bacteriophages and determination of phage resistance costs in bacterial hosts
title_full Characterization of Acinetobacter baumannii bacteriophages and determination of phage resistance costs in bacterial hosts
title_fullStr Characterization of Acinetobacter baumannii bacteriophages and determination of phage resistance costs in bacterial hosts Characterization of Acinetobacter baumannii bacteriophages and determination of phage resistance costs in bacterial hosts
title_full_unstemmed Characterization of Acinetobacter baumannii bacteriophages and determination of phage resistance costs in bacterial hosts Characterization of Acinetobacter baumannii bacteriophages and determination of phage resistance costs in bacterial hosts
title_short Characterization of Acinetobacter baumannii bacteriophages and determination of phage resistance costs in bacterial hosts
title_sort characterization of acinetobacter baumannii bacteriophages and determination of phage resistance costs in bacterial hosts
title_txtP Characterization of Acinetobacter baumannii bacteriophages and determination of phage resistance costs in bacterial hosts
topic Solu- ja molekyylibiologia Cell and molecular biology 4013 bakteriofagit antibiootit bakteerit fagiterapia Acinetobacter baumannii antibioottiresistenssi virukset mikrobiologia bacteriophages antibiotics bacteria phage therapy antibiotic resistance viruses microbiology
topic_facet 4013 Acinetobacter baumannii Cell and molecular biology Solu- ja molekyylibiologia antibiootit antibioottiresistenssi antibiotic resistance antibiotics bacteria bacteriophages bakteerit bakteriofagit fagiterapia microbiology mikrobiologia phage therapy virukset viruses
url https://jyx.jyu.fi/handle/123456789/76895 http://www.urn.fi/URN:NBN:fi:jyu-202106294085
work_keys_str_mv AT ylännematti characterizationofacinetobacterbaumanniibacteriophagesanddeterminationofphageresista